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63246_CGATGT_S1_L002_R1_001.fastq.gz FastQC Report
FastQCFastQC Report
Mon 20 Mar 2017
63246_CGATGT_S1_L002_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename63246_CGATGT_S1_L002_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11807838
Sequences flagged as poor quality0
Sequence length52
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTACG1750.001951396810.51345614
CTCGGAT15950.010.243381
CGACAAT6950.09.9330371
CGACCTA2402.5286013E-49.5825774
CGCGGAT6750.09.5455261
CCCGTAT7300.09.4567961
CCGGAAT11800.09.3606241
CGGGGTT21950.09.1207451
CGGAAAT14000.08.8758781
CTCGAAT16650.08.8452751
CTCGGTT10700.08.8175041
GTCGGTT8400.08.7662991
TCGGATA4751.8357241E-88.7155082
CGAAGAT19550.08.7102491
ATCGAAG15950.08.6513556
CTCGTAT6950.08.6086321
GAATCGA8400.08.4874264
TCGAATC7600.08.473412
GCGCTTA4903.1144737E-88.44895728
CGCGAAT2759.785884E-48.3678311
Produced by FastQC (version 0.11.5)