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63260_CCGTCC_S15_L001_R1_001.fastq.gz FastQC Report
FastQCFastQC Report
Mon 20 Mar 2017
63260_CCGTCC_S15_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename63260_CCGTCC_S15_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8578566
Sequences flagged as poor quality0
Sequence length52
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGATCG2401.7403927E-611.4997553
CGACGAT4450.011.3770431
CCGCAAT5850.010.2278471
CGGGGAT11200.09.8625671
CGACAGT8450.09.8042081
CTCGCAT7850.09.674111
CTCCGAT8600.09.6332041
CGAGAAT8450.09.5318691
TCGCATT7550.09.4442792
CGCAATT3907.318704E-89.4410891
TCCGATC4001.08866516E-79.2005552
CGGAGAT12000.09.0132891
CTCGCGT3401.1221933E-58.7989561
CGACAAC7600.08.7811441
CTTAGAT15750.08.76672651
TCAATCG4751.8349965E-88.7156043
CGGGAAT10450.08.5884551
TATCGAA5106.7648216E-98.5683465
CTCAGAT35750.08.5613521
CTCGAGT9450.08.5232061
Produced by FastQC (version 0.11.5)