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63260_CCGTCC_S15_L002_R1_001.fastq.gz FastQC Report
FastQCFastQC Report
Mon 20 Mar 2017
63260_CCGTCC_S15_L002_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename63260_CCGTCC_S15_L002_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8645954
Sequences flagged as poor quality0
Sequence length52
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGAAT9400.010.7711451
CGCGGAT5800.010.7120561
CGCGCAT2452.7237513E-510.3315071
CTCGGTT8350.09.6453651
CCCGTAT4303.3032848E-99.6325471
CTCGCAT9100.09.6090241
CGGAGAT11550.09.5630481
GTCGCAT4601.0459189E-99.5045781
CGAGAAT8250.09.2044331
CGAAGAT13300.09.1698291
CGCCAAT7550.09.1434771
CTCGGAT14350.09.1402911
CGCGTCT4601.0517397E-89.0043371
CCGCAAT6650.08.9968141
CCGGTAT6002.1827873E-118.8209161
CGTATCG3703.4855966E-68.7021133
GTCGGTT6703.6379788E-128.58622551
CGCGCTT4601.0054646E-78.5040961
CGCCATT10600.08.4663421
CCGGGAT12000.08.4373981
Produced by FastQC (version 0.11.5)