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63260_CCGTCC_S15_L003_R1_001.fastq.gz FastQC Report
FastQCFastQC Report
Mon 20 Mar 2017
63260_CCGTCC_S15_L003_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename63260_CCGTCC_S15_L003_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8694861
Sequences flagged as poor quality0
Sequence length52
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACGC2056.374395E-410.0968547
CGACGAT3958.445568E-99.90407851
CTCGGTT7750.09.7988371
GTCCGAT4701.4915713E-109.7925191
ATTCGCG1900.0038586539.6835336
GATCGAA6550.09.4802535
CGAAGAT15650.09.410831
CGAAAAT9150.09.3055681
CCGGGAT13600.09.1372841
CCCGTAT5055.838956E-109.1138281
CGGAAAT10150.09.06893351
CGGGAAT9600.08.86936951
CGTATCG3401.130447E-58.7938573
CACGGTT9200.08.7547241
CTCAGAT34200.08.7474111
CTCGCAT10050.08.7012121
CTCGAAT10350.08.6713461
CGATAAC4353.8992403E-78.4643371
CGGGGAT11700.08.2608671
CGGGTAC6153.237801E-108.2320841
Produced by FastQC (version 0.11.5)