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63286_GATCAG_S41_L005_R1_001.fastq.gz FastQC Report
FastQCFastQC Report
Tue 21 Mar 2017
63286_GATCAG_S41_L005_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename63286_GATCAG_S41_L005_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10082698
Sequences flagged as poor quality0
Sequence length52
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGTAT1503.4663444E-513.8050731
CGCGATT1650.001190154611.1556141
CCCGTAT5950.010.8275081
CTCGAAT13250.010.5925711
CTCGCAT9550.09.8779751
CGGAGAT14600.09.4555291
CCGGCAT12000.09.3951191
CCGGGAT16000.09.3471841
TCGGGTC11450.09.03885652
CGCCAAT8150.09.0339941
CGGGGAT14700.08.9216451
CTCGGAT15000.08.7432131
CGCAAAT7400.08.7059011
CTCGGGT16250.08.495431
CGCGGTT4353.9098086E-78.4628791
TCGAATC8700.08.4593542
CTCGTAT7350.08.45208551
GGAATCG9550.08.1878763
CTGGAAT58750.08.1459711
CGGCATT11300.08.1445861
Produced by FastQC (version 0.11.5)