This section provides the identifiers and notations used to report the analysis results on this website.
It also provides a description of some parts of the analysis and some comments that may help understand the results.

Analysis Procedure

• RNA Seq Analysis
  Read mapping, transcript and isoform detection,a nd differential expression were done using the Illumina Pipeline
  
• Differential Analysis
  Differential Analysis was done via:
  CyberT
  
• Functional Analysis
  Functional Analysis was performed using GO Terms
  Please click on links under tab for detailed reports of GO Terms for oscillating transcripts.
  
• TF Enrichment
  TF Enrichment was performed using MotifMap and CHiPSeq experiments obtained from ENCODE
  Please use table to see specific experiment identifiers.
  

Data Visualization

Data Download

• List of differentially expressed genes: list
• List of neuronal differentially expressed genes: list

• FPKM Table: Table
• Raw Table from CyberT: Table

Data Download

• List of targets: list
  

Data Visualization

Data Download

• List of targets: list
  

Data Visualization

MotifMap TFBS, CHiPSeq, and RBP Enrichment

• Factor Enrichment

Data Download

• TFBS Condition1 Excel