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ChipSeq Analysis
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Statistical plots

Peak Categories

The following pie chart shows the distribution of peak categories, by location. Gene desert means at least 1E6 bp away from any beginning or end of annotated genomic object. Gap means within 5k bp distance of known gaps such as centromeres. Promoter is -5k to +500.

Stat Diagram

The following graph shows 3 statistical results regarding the called peaks:

  1. number of peaks vs cutoff p value (log scale)
  2. scatter plot of log-pvalue vs log-fold change
  3. boxplot of log-pvalues

Stat Diagram

List of genes with peaks in promoter

Promoter Hits (genes)

Data table

Enriched Peaks (Annotated)

Peak distribution by chromosomes

Genome

Enrichment results are derived from promoter hits (data tab).

Enriched Pathways

Enriched TFs

FPKM Dataset

Differential Expression Analysis

ChIP-seq cross RNAseq

Venn diagram of Up and Down Genes Cross with ChIP-seq

Venn diagram

UP Genes

Peak Location in Up-regulated Genes

DOWN Genes

Peak Location in Down-regulated Genes

Heatmap for Promoter Genes

Promoter Genes Expression Level in AL and Fasting Group