Mouse Liver Pairwise Comparison - Analysis Results
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This section provides the identifiers and notations used to report the analysis results on this website.
It also provides a description of some parts of the analysis and some comments that may help understand the results.

Analysis Procedure

  • RNA Seq Analysis
    Read mapping, transcript and isoform detection,and differential expression were done using the Illumina Pipeline
  • Detecting Oscillation
    Detecting oscillating transcripts (P-Value, Q-Value, Period, Amplitude, Lag) was done via:
    BioCycle
  • Functional Analysis
    Functional Analysis was performed using GO Terms
    Please click on links under tab for detailed reports of GO Terms for oscillating transcripts.
  • TFBS Enrichment
    TFBS Enrichment was performed using MotifMap and CHiPSeq experiments obtained from ENCODE
    Please use table to see specific experiment identifiers.
  • Visualization
    Please visit Circadiomics for transcript visualization.
    Select Transcriptome
    Datasets:
    MOUSE_Liver_WT_sassone_illumina(Biocycle)
    MOUSE_Liver_RE_sassone_illumina(Biocycle)
    MOUSE_Liver_KO_sassone_illumina(Biocycle)

Venn Diagrams

Circadian Transcripts


Phase Analysis



Heatmaps

Circadian in BOTH Conditions


Radar Graphs

Both Conditions


Data Download

Data Visualization

Pathway Enrichment

Data Download

Pathway Enrichment

Downsteam Analysis





Data Download

  • Metabolite-Protein linkage for WT: Table
  • Metabolite-Protein linkage for RE: Table
  • Metabolite-Protein linkage for KO: Table