This section provides the identifiers and notations used to report the analysis results on this website.
It also provides a description of some parts of the analysis and some comments that may help understand the results.

Analysis Procedure

• RNA Seq Analysis
  Read mapping, transcript and isoform detection,and differential expression were done using the Illumina Pipeline
  
• Detecting Oscillation
  Detecting oscillating transcripts (P-Value, Q-Value, Period, Amplitude, Lag) was done via:
  BioCycle
  
• Functional Analysis
  Functional Analysis was performed using GO Terms
  Please click on links under tab for detailed reports of GO Terms for oscillating transcripts.
  
• TFBS Enrichment
  TFBS Enrichment was performed using MotifMap and CHiPSeq experiments obtained from ENCODE
  Please use table to see specific experiment identifiers.
  

Venn Diagrams

Circadian Transcripts

Phase Analysis

Heatmaps

Circadian in BOTH Conditions

Radar Graphs

Both Conditions

Data Download

• Dataset: Table
• Dataset: Table
• Genes: Table
• Genes: Table
• TFs: Table
• TFs: Table
• (BOTH) Genes: Table
• (BOTH) TFs: Table
  

Pathway Enrichment

• Pathway Enrichment Condition1: Pathway Analysis
  
• Pathway Enrichment Condtion2: Pathway Analysis
  
• Pathway Enrichment (BOTH): Pathway Analysis

Data Download

Pathway Enrichment

• Pathway Enrichment EXCEL: Excel Table
  
• Pathway Enrichment EXCEL: Excel Table
  
• Pathway Enrichment (BOTH) EXCEL: Excel Table

MotifMap TFBS, CHiPSeq, and RBP Enrichment

• Enriched Report Condition1
• Enriched Report Condition2
• Enriched Report Both

Data Download

• TFBS Condition1 Excel
• TFBS Condition2 Excel
• TFBS (Both) Excel

Downsteam Analysis

Data Download

• Protein-Metabolite Interaction (in-phase) : Table
• Protein-Metabolite Interaction (in-phase, highest-scored (80 percentile)) : Table
• Protein Functional Enrichment (in-phase): Table


• Protein-Metabolite Interaction (lag term dropped) : Table
• Protein-Metabolite Interaction (lag term dropped, highest-scored (80 percentile)) : Table
• Protein Functional Enrichment (lag term dropped): Table