Basic Statistics
Measure | Value |
---|---|
Filename | 26681_ID1144_1_S9_L004-R2_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 15873256 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTGGGCAAGTGAGCTTTTTAGTTTGTGTCGGAAGCCTGTAATTACGGCTC | 17976 | 0.11324708679807093 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTGTGC | 13615 | 0.0 | 46.59905 | 1 |
TCTTCCG | 22350 | 0.0 | 28.034945 | 8 |
GTGCTCT | 22865 | 0.0 | 27.975182 | 4 |
GTGTGCT | 23770 | 0.0 | 27.105936 | 2 |
TGTGCTC | 24030 | 0.0 | 26.57187 | 3 |
ATTACGG | 5900 | 0.0 | 26.296116 | 40-41 |
CTTCCGA | 24360 | 0.0 | 25.056923 | 9 |
TCCGATC | 15225 | 0.0 | 24.716015 | 7 |
CCGATCT | 15615 | 0.0 | 24.06131 | 8 |
TTCCGAT | 17470 | 0.0 | 21.747986 | 6 |
TTACGGC | 6060 | 0.0 | 21.120916 | 42-43 |
TGCTCTT | 32055 | 0.0 | 20.117714 | 5 |
CGATCTA | 2570 | 0.0 | 18.892702 | 8 |
CGTAACG | 2075 | 0.0 | 18.379139 | 40-41 |
GTCGGAA | 8615 | 0.0 | 18.078245 | 26-27 |
CGGAATA | 6300 | 0.0 | 17.933668 | 4 |
CCCCCGT | 4335 | 0.0 | 17.910028 | 1 |
GCGGAAT | 6390 | 0.0 | 17.500511 | 3 |
GTGTCGG | 9140 | 0.0 | 17.388105 | 24-25 |
CGGGGGA | 10235 | 0.0 | 17.152815 | 1 |