Basic Statistics
Measure | Value |
---|---|
Filename | 26682_ID1144_2_S50_L006_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5597771 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTGTGC | 3745 | 0.0 | 27.982355 | 1 |
CGTTGAT | 960 | 0.0 | 26.683636 | 1 |
TCTTCCG | 4715 | 0.0 | 21.531948 | 8 |
CTTCCGA | 5275 | 0.0 | 19.355724 | 9 |
TCCGATC | 2645 | 0.0 | 19.31431 | 6 |
TTCCGAT | 2810 | 0.0 | 19.037569 | 5 |
CGATCTA | 835 | 0.0 | 16.67446 | 8 |
CCGATCT | 3135 | 0.0 | 16.471672 | 7 |
GTGTGCT | 7200 | 0.0 | 14.5368395 | 2 |
GTGCTCT | 7200 | 0.0 | 14.3753195 | 4 |
TGTGCTC | 7835 | 0.0 | 13.210249 | 3 |
CGATCTC | 1685 | 0.0 | 12.908761 | 12-13 |
CGGAATT | 2130 | 0.0 | 12.011662 | 2 |
TGCTCTT | 8970 | 0.0 | 11.538718 | 5 |
TTGATTA | 2240 | 0.0 | 11.421803 | 3 |
ATATCGG | 1275 | 0.0 | 11.372396 | 28-29 |
CTAGATA | 1320 | 0.0 | 11.012758 | 2 |
CGTTAAC | 380 | 0.0075082504 | 10.724524 | 1 |
CCGGAAT | 2670 | 0.0 | 10.466309 | 1 |
GCTCTTC | 10055 | 0.0 | 10.219118 | 6 |