Basic Statistics
Measure | Value |
---|---|
Filename | 26683_ID1144_3_S72_L008-R2_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4051085 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 5506 | 0.13591420570044815 | No Hit |
GTGGGCAAGTGAGCTTTTTAGTTTGTGTCGGAAGCCTGTAATTACGGCTC | 4646 | 0.11468532504255033 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTGTGC | 2870 | 0.0 | 37.15631 | 1 |
ATTACGG | 1470 | 0.0 | 27.91524 | 40-41 |
TCCGATC | 3350 | 0.0 | 25.724085 | 6 |
TTACGGC | 1440 | 0.0 | 25.085062 | 42-43 |
CCGATCT | 3545 | 0.0 | 23.647415 | 7 |
TTCCGAT | 3800 | 0.0 | 22.114151 | 5 |
CGATCTA | 605 | 0.0 | 21.975832 | 8 |
CGTAACG | 415 | 0.0 | 21.586586 | 40-41 |
TCTTCCG | 5410 | 0.0 | 21.156351 | 8 |
CCCCCGT | 1100 | 0.0 | 21.074823 | 1 |
GTGTGCT | 5460 | 0.0 | 20.274153 | 2 |
GCGGAAT | 1580 | 0.0 | 20.174725 | 3 |
GTGCTCT | 5555 | 0.0 | 19.718277 | 4 |
AATTACG | 1855 | 0.0 | 19.473162 | 40-41 |
TGTGCTC | 5600 | 0.0 | 19.353325 | 3 |
GGCAAGT | 3685 | 0.0 | 19.344559 | 4 |
CGGAATA | 1665 | 0.0 | 19.144308 | 4 |
TAATTAC | 2250 | 0.0 | 19.136656 | 38-39 |
CTTCCGA | 5655 | 0.0 | 19.013346 | 9 |
GTCGGAA | 2180 | 0.0 | 18.958717 | 26-27 |