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26684_ID1144_4_S12_L004_R1_001.fastq.gz FastQC Report
FastQCFastQC Report
Sat 1 Dec 2018
26684_ID1144_4_S12_L004_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename26684_ID1144_4_S12_L004_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18072289
Sequences flagged as poor quality0
Sequence length125
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTGC144350.046.6381
TCTTCCG218400.030.7849128
TCCGATC152300.027.876117
CTTCCGA241300.027.646439
TTCCGAT159200.026.6829096
GTGTGCT258350.026.1031932
GTGCTCT263750.025.7667984
CCGATCT165250.025.7224858
TGTGCTC281050.024.2220233
CGATCTA42150.021.707189
TGCTCTT343750.019.7532775
CGATCTC76200.019.6068869
GCTCTTC396300.017.2556066
CGTTGAT30350.014.9282611
CGATCTT51100.014.6188339
CGATCTG82000.014.4065589
TAATCGT17250.012.459081
CTCTTCC589300.011.8238067
ATATCGG42650.09.97789428-29
TCGTTGA24800.09.8286444
Produced by FastQC (version 0.11.5)