Basic Statistics
Measure | Value |
---|---|
Filename | 26684_ID1144_4_S51_L006-R2_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3613292 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTGGGCAAGTGAGCTTTTTAGTTTGTGTCGGAAGCCTGTAATTACGGCTC | 3624 | 0.10029635025345308 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTGTGC | 2315 | 0.0 | 27.850119 | 1 |
ATTACGG | 1325 | 0.0 | 25.119621 | 40-41 |
CGGAATA | 1285 | 0.0 | 23.95608 | 4 |
TTACGGC | 1240 | 0.0 | 23.573376 | 42-43 |
CGGGCTA | 635 | 0.0 | 21.952932 | 1 |
TCCGATC | 2190 | 0.0 | 21.700031 | 6 |
CCCCCGT | 1020 | 0.0 | 21.639063 | 1 |
GCGGAAT | 1330 | 0.0 | 20.963451 | 3 |
CCGATCT | 2360 | 0.0 | 20.372862 | 7 |
CGATCTA | 440 | 5.456968E-12 | 19.744781 | 8 |
TTCCGAT | 2555 | 0.0 | 18.639307 | 5 |
GGGGGTA | 3180 | 0.0 | 18.448002 | 1 |
GGTTCGA | 1025 | 0.0 | 18.132977 | 4 |
CGTAACG | 405 | 0.0 | 17.865538 | 40-41 |
AATTACG | 1640 | 0.0 | 17.647667 | 40-41 |
TAATTAC | 1990 | 0.0 | 17.452688 | 38-39 |
GGCAAGT | 3565 | 0.0 | 17.432802 | 4 |
CTATACT | 2065 | 0.0 | 17.431454 | 68-69 |
GTTCGAT | 1040 | 0.0 | 17.31152 | 5 |
CGGGGGT | 2385 | 0.0 | 17.291197 | 1 |