Basic Statistics
Measure | Value |
---|---|
Filename | 26687_ID1144_7_S15_L004_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17645151 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 23614 | 0.13382713471820107 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTGTGC | 12550 | 0.0 | 33.987373 | 1 |
TCTTCCG | 17905 | 0.0 | 23.654665 | 8 |
TCCGATC | 11670 | 0.0 | 22.613853 | 6 |
TTCCGAT | 12040 | 0.0 | 21.756725 | 5 |
CTTCCGA | 20325 | 0.0 | 20.525053 | 9 |
CCGATCT | 12870 | 0.0 | 20.492823 | 7 |
GTGTGCT | 23540 | 0.0 | 18.497385 | 2 |
CGATCTA | 3295 | 0.0 | 18.211868 | 9 |
GTGCTCT | 24830 | 0.0 | 17.3035 | 4 |
CGTTGAT | 2990 | 0.0 | 17.227118 | 1 |
TGTGCTC | 26240 | 0.0 | 16.461847 | 3 |
CGATCTC | 6290 | 0.0 | 14.494442 | 8 |
TGCTCTT | 30745 | 0.0 | 14.162578 | 5 |
GCTCTTC | 35250 | 0.0 | 12.43403 | 6 |
CGATCTG | 7020 | 0.0 | 11.836423 | 8 |
TAATCGT | 1540 | 0.0 | 10.14698 | 1 |
CGATCTT | 4710 | 0.0 | 9.188305 | 8 |
CGGAATT | 6485 | 0.0 | 8.738521 | 2 |
ATATCGG | 4025 | 0.0 | 8.599476 | 28-29 |
GTTGATT | 7685 | 0.0 | 8.577936 | 2 |